Steven Kelk: search on Z-Library

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1

Networks: expanding evolutionary thinking

Bapteste, Eric, van Iersel, Leo, Janke, Axel, Kelchner, Scot, Kelk, Steven, McInerney, James O., Morrison, David A., Nakhleh, Luay, Steel, Mike, Stougie, Leen, Whitfield, James

Journal:

Trends in Genetics

Year:

2013

Language:

english

File:

PDF, 127 KB

english, 2013

2

Constructing the Simplest Possible Phylogenetic Network from Triplets

Leo van Iersel, Steven Kelk

Journal:

Year:

2011

Language:

english

File:

PDF, 946 KB

english, 2011

3

Worst-case optimal approximation algorithms for maximizing triplet consistency within phylogenetic networks

Jaroslaw Byrka, Pawel Gawrychowski, Katharina T. Huber, Steven Kelk

Journal:

Journal of Discrete Algorithms

Year:

2010

Language:

english

File:

PDF, 279 KB

english, 2010

4

Deciding the existence of a cherry-picking sequence is hard on two trees

Döcker, Janosch, van Iersel, Leo, Kelk, Steven, Linz, Simone

Journal:

Discrete Applied Mathematics

Year:

2019

Language:

english

File:

PDF, 495 KB

english, 2019

5

Prefix Reversals on Binary and Ternary Strings

Hurkens, Cor, van Iersel, Leo, Keijsper, Judith, Kelk, Steven, Stougie, Leen, Tromp, John

Journal:

SIAM Journal on Discrete Mathematics

Year:

2007

Language:

english

File:

PDF, 250 KB

english, 2007

6

Approximation Algorithms for Nonbinary Agreement Forests

van Iersel, Leo, Kelk, Steven, Lekić, Nela, Stougie, Leen

Journal:

SIAM Journal on Discrete Mathematics

Year:

2014

Language:

english

File:

PDF, 285 KB

english, 2014

7

Reduction rules for the maximum parsimony distance on phylogenetic trees

Kelk, Steven, Fischer, Mareike, Moulton, Vincent, Wu, Taoyang

Journal:

Theoretical Computer Science

Year:

2016

Language:

english

File:

PDF, 547 KB

english, 2016

8

Do Branch Lengths Help to Locate a Tree in a Phylogenetic Network?

Gambette, Philippe, van Iersel, Leo, Kelk, Steven, Pardi, Fabio, Scornavacca, Celine

Journal:

Bulletin of Mathematical Biology

Year:

2016

Language:

english

File:

PDF, 912 KB

english, 2016

9

Treewidth distance on phylogenetic trees

Kelk, Steven, Stamoulis, Georgios, Wu, Taoyang

Journal:

Theoretical Computer Science

Year:

2018

Language:

english

File:

PDF, 695 KB

english, 2018

10

UNIQUENESS, INTRACTABILITY AND EXACT ALGORITHMS: REFLECTIONS ON LEVEL-K PHYLOGENETIC NETWORKS

VAN IERSEL, LEO, KELK, STEVEN, MNICH, MATTHIAS

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2009

Language:

english

File:

PDF, 657 KB

english, 2009

11

On Unrooted and Root-Uncertain Variants of Several Well-Known Phylogenetic Network Problems

van Iersel, Leo, Kelk, Steven, Stamoulis, Georgios, Stougie, Leen, Boes, Olivier

Journal:

Year:

2017

Language:

english

File:

PDF, 786 KB

english, 2017

12

A Resolution of the Static Formulation Question for the Problem of Computing the History Bound

Matsieva, Julia, Kelk, Steven, Scornavacca, Celine, Whidden, Chris, Gusfield, Daniel

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2016

Language:

english

File:

PDF, 3.32 MB

english, 2016

13

ToTo: An open database for computation, storage and retrieval of tree decompositions

van Wersch, Rim, Kelk, Steven

Journal:

Discrete Applied Mathematics

Year:

2016

Language:

english

File:

PDF, 874 KB

english, 2016

14

New Reduction Rules for the Tree Bisection and Reconnection Distance

Kelk, Steven, Linz, Simone

Journal:

Annals of Combinatorics

Year:

2020

File:

PDF, 668 KB

2020

15

Phylogenetic Networks: Concepts, Algorithms and Applicationsby Daniel H. Huson; Regula Rupp; Celine Scornavacca

Journal:

Systematic Biology

Year:

2012

Language:

english

File:

PDF, 454 KB

english, 2012

16

Hybridization Number on Three Rooted Binary Trees is EPT

van Iersel, Leo, Kelk, Steven, Lekić, Nela, Whidden, Chris, Zeh, Norbert

Journal:

SIAM Journal on Discrete Mathematics

Year:

2016

Language:

english

File:

PDF, 628 KB

english, 2016

17

[ACM Press the thiry-fourth annual ACM symposium - Montreal, Quebec, Canada (2002.05.19-2002.05.21)] Proceedings of the thiry-fourth annual ACM symposium on Theory of computing - STOC '02 - The complexity of choosing an H -colouring (nearly) uniformly at random

Goldberg, Leslie Ann, Kelk, Steven, Paterson, Mike

Year:

2002

Language:

english

File:

PDF, 218 KB

english, 2002

18

On Computing the Maximum Parsimony Score of a Phylogenetic Network

Fischer, Mareike, van Iersel, Leo, Kelk, Steven, Scornavacca, Celine

Journal:

SIAM Journal on Discrete Mathematics

Year:

2015

Language:

english

File:

PDF, 420 KB

english, 2015

19

A note on convex characters, Fibonacci numbers and exponential-time algorithms

Kelk, Steven, Stamoulis, Georgios

Journal:

Advances in Applied Mathematics

Year:

2017

Language:

english

File:

PDF, 394 KB

english, 2017

20

Maximum parsimony distance on phylogenetic trees: A linear kernel and constant factor approximation algorithm

Jones, Mark, Kelk, Steven, Stougie, Leen

Journal:

Journal of Computer and System Sciences

Year:

2020

File:

PDF, 958 KB

2020

21

A Practical Algorithm for Reconstructing Level-1 Phylogenetic Networks

Huber, Katharina T, van Iersel, Leo, Kelk, Steven, Suchecki, R

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 993 KB

english, 2011

22

Optimal flux spaces of genome-scale stoichiometric models are determined by a few subnetworks

Kelk, Steven M., Olivier, Brett G., Stougie, Leen, Bruggeman, Frank J.

Journal:

Scientific Reports

Year:

2012

Language:

english

File:

PDF, 975 KB

english, 2012

23

On the Elusiveness of Clusters

Kelk, Steven, Scornavacca, Celine, van Iersel, Leo

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2012

Language:

english

File:

PDF, 1.26 MB

english, 2012

24

The Complexity of the Single Individual SNP Haplotyping Problem

Rudi Cilibrasi, Leo van Iersel, Steven Kelk, John Tromp

Journal:

Year:

2007

Language:

english

File:

PDF, 234 KB

english, 2007

25

A practical approximation algorithm for solving massive instances of hybridization number for binary and nonbinary trees

Iersel, Leo, Kelk, Steven, Lekić, Nela, Scornavacca, Celine

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 451 KB

english, 2014

26

Kernelizations for the hybridization number problem on multiple nonbinary trees

van Iersel, Leo, Kelk, Steven, Scornavacca, Celine

Journal:

Journal of Computer and System Sciences

Year:

2016

Language:

english

File:

PDF, 965 KB

english, 2016

27

On the Complexity of Computing MP Distance Between Binary Phylogenetic Trees

Kelk, Steven, Fischer, Mareike

Journal:

Annals of Combinatorics

Year:

2017

Language:

english

File:

PDF, 1.61 MB

english, 2017

28

A Simple Fixed Parameter Tractable Algorithm for Computing the Hybridization Number of Two (Not Necessarily Binary) Trees

Piovesan, Teresa, Kelk, Steven M.

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2013

Language:

english

File:

PDF, 243 KB

english, 2013

29

A linear bound on the number of states in optimal convex characters for maximum parsimony distance

Boes, Olivier, Fischer, Mareike, Kelk, Steven

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2016

Language:

english

File:

PDF, 966 KB

english, 2016

30

Constructing Minimal Phylogenetic Networks from Softwired Clusters is Fixed Parameter Tractable

Steven Kelk, Celine Scornavacca

Journal:

Year:

2014

Language:

english

File:

PDF, 1012 KB

english, 2014

31

A Tight Kernel for Computing the Tree Bisection and Reconnection Distance between Two Phylogenetic Trees

Kelk, Steven, Linz, Simone

Journal:

SIAM Journal on Discrete Mathematics

Year:

2019

File:

PDF, 911 KB

2019

32

Cycle Killer...Qu'est-ce que c'est? On the Comparative Approximability of Hybridization Number and Directed Feedback Vertex Set

Kelk, Steven, van Iersel, Leo, Lekić, Nela, Linz, Simone, Scornavacca, Celine, Stougie, Leen

Journal:

SIAM Journal on Discrete Mathematics

Year:

2012

Language:

english

File:

PDF, 409 KB

english, 2012

33

On the Maximum Parsimony Distance Between Phylogenetic Trees

Fischer, Mareike, Kelk, Steven

Journal:

Annals of Combinatorics

Year:

2016

Language:

english

File:

PDF, 1.22 MB

english, 2016

34

Finding a most parsimonious or likely tree in a network with respect to an alignment

Kelk, Steven, Pardi, Fabio, Scornavacca, Celine, van Iersel, Leo

Journal:

Journal of Mathematical Biology

Year:

2018

Language:

english

File:

PDF, 635 KB

english, 2018

35

A Machine Learning Approach to Algorithm Selection for Exact Computation of Treewidth

Slavchev, Borislav, Masliankova, Evelina, Kelk, Steven

Journal:

Year:

2019

Language:

english

File:

PDF, 516 KB

english, 2019

36

When two trees go to war

Leo van Iersel, Steven Kelk

Journal:

Journal of Theoretical Biology

Year:

2011

Language:

english

File:

PDF, 426 KB

english, 2011

37

Review of

Journal:

ACM SIGACT News

Year:

2016

Language:

english

File:

PDF, 587 KB

english, 2016

38

The Complexity of Choosing an H -Coloring (Nearly) Uniformly at Random

Goldberg, Leslie Ann, Kelk, Steven, Paterson, Mike

Journal:

SIAM Journal on Computing

Year:

2004

Language:

english

File:

PDF, 216 KB

english, 2004

39

Satisfying ternary permutation constraints by multiple linear orders or phylogenetic trees

van Iersel, Leo, Kelk, Steven, Lekić, Nela, Linz, Simone

Journal:

Theoretical Computer Science

Year:

2016

Language:

english

File:

PDF, 662 KB

english, 2016

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